PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466588.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 490aa    MW: 53871.4 Da    PI: 9.4068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146585323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_016466588.1 65 CEICNKGFQRDQNLQLHRRGH 85
                    *******************88 PP

2zf-C2H212.80.00036140162123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016466588.1 140 WKCEKCSKKYAVQSDWKAHSKTC 162
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.81E-76285No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8246385IPR007087Zinc finger, C2H2
SMARTSM003550.116385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355130105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MMSGDVFSFP SSVKAVLPQH ELQTNPNPKP NPASSKRRRN LPGTPDAEVI ALSPKSLMAT  60
NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKDEIV KKKVYICPEK TCIHHDASRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LAEESSRITS VGANNMNFPN TNDTLLNQQS SLHGISQIGT FYRPDFASMA  240
TGNSLHQQQQ KPRLSLWLDQ ANNPLQTSAN SNIFESTTTS GFVDMIQMPS SNVFGSSSTA  300
ANFSLSSSQG TSMAETLSSL YSDSQNNHLT KSSTPMSATA LLQKAAQMGS TKSNQSTFFS  360
NSFNLMSSSS SSPSNTPTFS SLHSSETTDQ KFPKISEDYT VSLGEDNGGL IGCTNFSSSA  420
NTKAINLDQA IMQTVGMQTP TVSMSLQQGI NNCLTRDFLG IRNEPFLSQE MAKFASLSSA  480
MGLSHYSSSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-144HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466588.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ700D21e-124IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLK4D3K40.0K4D3K4_SOLLC; Uncharacterized protein
STRINGSolyc10g084180.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-102C2H2-like zinc finger protein